PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40981
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 333aa    MW: 34736.9 Da    PI: 10.064
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40981genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.72.8e-40491614114
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskks 100
                  k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +s++s+ s++ ++++   +++ +
  PEQU_40981  49 PKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFSsLNVSLRSTGSSLSAPTSKSAPLfTHHYE 147
                 689****************************************************************99988888888888777777666666677777 PP

         TCP 101 qksaasalnlakes 114
                  ++++s+l++++  
  PEQU_40981 148 ITDPSSMLAFQQPD 161
                 77777777777643 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3852149IPR005333Transcription factor, TCP
PROSITE profilePS5136927.70653107IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDQTDHRHSM VHPPPPPATS ALLTGSSHVD SSLVISSSKP KTAAAIPPPK RSSKDRHTKV  60
DGRGRRIRMP AACAARVFQL TRELGHKSDG ETIEWLLQQA EPAIIATTGT GTIPANFSSL  120
NVSLRSTGSS LSAPTSKSAP LFTHHYEITD PSSMLAFQQP DVPLVAESTD TYLRKRFREN  180
LFKEEQEGAG AAASSSPPKP GSRPVIPATM WAVAPGSSGG AGAFWMLPVT APEAPSSLWT  240
FPTAGASSMQ APLQFGRAMG GMQLGSMFPA VQHLGLGISD SNLGMIGSIN PYSRSGRGGG  300
GEGGTVMNAD HGSGIDRRRS SQSGGGEGNS NSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004002.11e-83PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF04e-63TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A0D2S4292e-80A0A0D2S429_G
TrEMBLM1CBU26e-80M1CBU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641642e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.16e-45TCP family protein